The Giant Bacterium: Ca. Epulopiscium viviparus

The Giant Bacterium: Ca. Epulopiscium viviparus

  • Largest Known Heterotrophic Bacteria.

  • Intestinal symbionts of tropical marine surgeonfish.

  • Individual cigar-shaped cells may reach up to 600 µm in length and 80 µm in width. A large individual is a million times the volume of Escherichia coli.

  • Relies on fermentation for energy conservation. The genome encodes a complete set of genes for the non-oxidative branch of the pentose phosphate pathway (PPP).

  • Approximately 0.8% of the genes are >5 kb. Of these 21 genes, six are >10 kb and half of those are >15 kb. The largest gene encodes a 6,869-residue protein.

  • Cells have numerous peritrichous flagella and regularly spaced flagellar motors are seen in thin sections of the cell envelope.

  • The Ca. E. viviparus genome suggests that this microbial symbiont has adapted to maximize access to available organic carbon (e.g., algal carbohydrates) and nitrogen while the host gets nutritional benefits.

  • The bacterium likely takes advantage of the Sodium-rich gut environment which is suitable to support a Sodium Motive Force for energy generation using a fermentative metabolism and to drive flagellar rotation.

  • The few features shared by all bacterial behemoths include extreme polyploidy, polyphosphate synthesis, and thus far, unculturable in the lab.
Genome featureValue
Genome size (bp)3,282,201
Contigs7
Max contig length (bp)905,387
N50 (bp)602,975
G + C content38.08%
Coding density91.96%
ORFs2,714
Protein coding genes2,635
tRNAs54
16S rRNA genes6
23S rRNA genes6
5S rRNA genes6
Genome completeness based on CheckM (Bacillota)97%
Genome completeness based on CheckM (Clostridia)99%
Genome completeness based on conserved gene list92%
Percent completeness based on the conserved gene list was determined using essential single-copy genes found in Cellulosilyticum lentocellum DSM 5427, the closest cultured, sequenced relative of Ca. Epulopiscium viviparus.

Reference:

Sannino, D. R., Arroyo, F. A., Pepe-Ranney, C., Chen, W., Volland, J. M., Elisabeth, N. H., & Angert, E. R. (2023). The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force. Proceedings of the National Academy of Sciences, 120(52), e2306160120.

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